A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2020-06-04, 14:53
based on data in:
/mnt/disks/sba1/pipeline_v4/LOGS/FASTP_LOG
General Statistics
Showing 168/168 rows and 4/6 columns.| Sample Name | % Duplication | GC content | % PF | % Adapter |
|---|---|---|---|---|
| R2809_D2A01ACXX_TAATGCGC_L005_R1_001 | 1.4% | 46.8% | 93.8% | 0.8% |
| R2826_C00JVACXX_TGACCA_L001_R1_001 | 5.7% | 48.8% | 87.7% | 0.9% |
| R2828_C0UH3ACXX_TAATGCGC_L005_R1_001 | 2.8% | 47.7% | 96.4% | 0.9% |
| R2834_C0CEWACXX_ATCACG_L005_R1_001 | 3.5% | 50.2% | 75.6% | 3.0% |
| R2836_C3V3YACXX_CGGCTATG_L001_R1_001 | 0.6% | 47.9% | 93.3% | 0.9% |
| R2839_C0UH3ACXX_ATTACTCG_L001_R1_001 | 1.2% | 47.7% | 96.6% | 0.9% |
| R2841_C0JV6ACXX_ATCACG_L001_R1_001 | 1.9% | 48.0% | 78.9% | 0.8% |
| R2845_C00JVACXX_GCCAAT_L002_R1_001 | 6.7% | 48.9% | 89.0% | 1.2% |
| R2855_D0ATGACXX_TAGCTT_L004_R1_001 | 4.0% | 52.8% | 83.9% | 2.5% |
| R2857_D0ATGACXX_GGCTAC_L004_R1_001 | 7.2% | 51.8% | 82.2% | 3.0% |
| R2866_C0CEWACXX_CGATGT_L005_R1_001 | 5.2% | 48.9% | 75.4% | 2.8% |
| R2869_C0CEWACXX_TTAGGC_L006_R1_001 | 2.7% | 47.6% | 67.1% | 2.0% |
| R2874_C0CEWACXX_TGACCA_L006_R1_001 | 3.2% | 47.6% | 67.0% | 2.0% |
| R2885_C00JVACXX_ACTTGA_L002_R1_001 | 4.7% | 48.9% | 91.8% | 0.9% |
| R2886_C28J4ACXX_GAGATTCC_L001_R1_001 | 1.4% | 46.6% | 95.4% | 1.6% |
| R2890_C00L0ACXX_TTAGGC_L002_R1_001 | 1.2% | 48.6% | 87.5% | 1.0% |
| R2893_C0JV6ACXX_TTAGGC_L001_R1_001 | 2.3% | 47.3% | 79.3% | 0.7% |
| R2894_C0JV6ACXX_ATCACG_L005_R1_001 | 3.9% | 47.9% | 81.6% | 0.7% |
| R2896_C28MYACXX_TAATGCGC_L001_R1_001 | 1.0% | 47.5% | 94.0% | 0.8% |
| R2897_C0CEWACXX_GCCAAT_L006_R1_001 | 2.6% | 47.6% | 67.7% | 2.2% |
| R2901_C0CEWACXX_ACTTGA_L007_R1_001 | 7.1% | 51.8% | 75.4% | 2.7% |
| R2945_C28MYACXX_CGGCTATG_L001_R1_001 | 1.8% | 46.3% | 94.6% | 0.8% |
| R2947_D193PACXX_TGACCA_L007_R1_001 | 0.8% | 48.3% | 89.2% | 0.8% |
| R2948_C00L0ACXX_ACTTGA_L003_R1_001 | 2.0% | 47.3% | 85.2% | 0.8% |
| R2954_C00JVACXX_TAGCTT_L002_R1_001 | 4.5% | 47.3% | 90.7% | 0.8% |
| R2958_C0CEWACXX_GATCAG_L007_R1_001 | 7.2% | 51.9% | 72.7% | 2.9% |
| R2962_C28MYACXX_CGGCTATG_L005_R1_001 | 0.6% | 47.0% | 95.0% | 0.8% |
| R2980_C0JV6ACXX_ACAGTG_L001_R1_001 | 1.9% | 48.0% | 79.5% | 0.7% |
| R2996_C0CEWACXX_TAGCTT_L008_R1_001 | 7.2% | 50.9% | 69.1% | 2.2% |
| R2999_C00JVACXX_CTTGTA_L003_R1_001 | 5.4% | 48.4% | 90.3% | 0.7% |
| R3005_C0JV6ACXX_GCCAAT_L002_R1_001 | 2.6% | 47.0% | 81.6% | 0.6% |
| R3016_D2A01ACXX_ATTACTCG_L001_R1_001 | 1.4% | 46.8% | 93.3% | 0.6% |
| R3017_C0JV6ACXX_CAGATC_L002_R1_001 | 3.9% | 47.8% | 79.4% | 0.7% |
| R3036_D193PACXX_TAGCTT_L007_R1_001 | 1.1% | 47.0% | 91.3% | 0.6% |
| R3071_C28MPACXX_CGGCTATG_L005_R1_001 | 3.2% | 46.9% | 90.1% | 1.1% |
| R3373_C0VJYACXX_CGATGT_L005_R1_001 | 2.8% | 48.7% | 80.7% | 1.9% |
| R3375_C0UH3ACXX_ATTCAGAA_L005_R1_001 | 0.5% | 47.9% | 96.5% | 0.8% |
| R3385_C00JVACXX_TGACCA_L003_R1_001 | 4.3% | 48.6% | 89.7% | 0.8% |
| R3393_C0JV6ACXX_ACTTGA_L002_R1_001 | 2.1% | 47.5% | 80.5% | 0.8% |
| R3395_C28MYACXX_TCCGGAGA_L001_R1_001 | 0.9% | 47.5% | 95.3% | 0.8% |
| R3399_C00JVACXX_CAGATC_L004_R1_001 | 4.6% | 48.2% | 89.0% | 0.6% |
| R3419_C0JV6ACXX_TAGCTT_L002_R1_001 | 2.5% | 47.5% | 80.8% | 0.6% |
| R3421_C00JVACXX_TAGCTT_L004_R1_001 | 4.3% | 48.9% | 89.5% | 0.7% |
| R3441_C00JVACXX_CTTGTA_L005_R1_001 | 3.9% | 48.7% | 91.4% | 0.6% |
| R3444_D0HMLACXX_ATCACG_L001_R1_001 | 6.0% | 47.7% | 85.9% | 1.8% |
| R3445_D0HMLACXX_CGATGT_L001_R1_001 | 3.4% | 48.1% | 87.0% | 1.0% |
| R3455_C0GWRACXX_GATCAG_L001_R1_001 | 5.8% | 46.8% | 82.4% | 0.6% |
| R3469_C0JV6ACXX_CGATGT_L003_R1_001 | 1.3% | 48.3% | 75.8% | 0.6% |
| R3478_C0JYLACXX_GGCTAC_L002_R1_001 | 12.9% | 47.5% | 89.5% | 0.6% |
| R3479_D0HMLACXX_GCCAAT_L002_R1_001 | 8.3% | 47.9% | 86.6% | 2.0% |
| R3489_D19K4ACXX_TCTCGCGC_L003_R1_001 | 2.9% | 47.6% | 95.4% | 1.0% |
| R3491_D0HMLACXX_CAGATC_L002_R1_001 | 4.7% | 47.6% | 88.8% | 1.7% |
| R3496_C0VJYACXX_ACTTGA_L006_R1_001 | 35.8% | 46.9% | 75.7% | 1.5% |
| R3506_C2K2WACXX_ATTCAGAA_L005_R1_001 | 1.5% | 47.4% | 42.7% | 1.7% |
| R3518_C0GWRACXX_TTAGGC_L001_R1_001 | 10.0% | 47.1% | 82.9% | 0.6% |
| R3540_D0HMLACXX_CGATGT_L003_R1_001 | 8.6% | 47.6% | 87.4% | 2.0% |
| R3541_C0GWRACXX_ATCACG_L001_R1_001 | 2.9% | 47.8% | 82.2% | 0.6% |
| R3543_C0JV6ACXX_TTAGGC_L003_R1_001 | 1.9% | 47.8% | 75.5% | 0.6% |
| R3554_C0JV6ACXX_TGACCA_L004_R1_001 | 2.1% | 48.3% | 79.4% | 0.7% |
| R3555_C0VJYACXX_TGACCA_L006_R1_001 | 2.8% | 46.9% | 77.3% | 1.5% |
| R3568_D0HMLACXX_GCCAAT_L004_R1_001 | 5.9% | 47.8% | 87.3% | 1.0% |
| R3575_C0JV6ACXX_GCCAAT_L004_R1_001 | 1.8% | 48.2% | 79.6% | 0.5% |
| R3598_C0JYLACXX_ATCACG_L003_R1_001 | 8.2% | 47.3% | 88.4% | 0.7% |
| R3602_C0VJYACXX_GATCAG_L001_R1_001 | 4.8% | 46.8% | 79.3% | 2.8% |
| R3607_D19K4ACXX_CGGCTATG_L007_R1_001 | 4.3% | 48.4% | 89.7% | 1.2% |
| R3611_C0VJYACXX_GGCTAC_L002_R1_001 | 2.0% | 47.6% | 87.5% | 1.0% |
| R3639_C2K2WACXX_GAATTCGT_L001_R1_001 | 2.8% | 47.1% | 89.3% | 2.1% |
| R3646_C28MYACXX_GAGATTCC_L001_R1_001 | 2.0% | 46.0% | 94.7% | 0.8% |
| R3656_D29FJACXX_TCCGGAGA_L001_R1_001 | 2.6% | 46.5% | 94.9% | 1.8% |
| R3666_C0JM8ACXX_TGACCA_L006_R1_001 | 10.9% | 47.0% | 74.4% | 1.0% |
| R3673_D29FJACXX_CGCTCATT_L001_R1_001 | 2.3% | 45.9% | 94.9% | 1.9% |
| R3674_C00JVACXX_ATCACG_L005_R1_001 | 2.3% | 48.9% | 91.9% | 0.6% |
| R3676_D29FJACXX_GAGATTCC_L001_R1_001 | 1.8% | 46.5% | 95.2% | 1.6% |
| R3678_D29FJACXX_GAATTCGT_L001_R1_001 | 2.1% | 46.6% | 95.1% | 2.2% |
| R3705_C0JYLACXX_TTAGGC_L003_R1_001 | 12.3% | 47.6% | 88.5% | 0.6% |
| R3765_D29GFACXX_ATTCAGAA_L001_R1_001 | 2.2% | 46.8% | 88.1% | 1.4% |
| R3771_D0HMLACXX_TAGCTT_L006_R1_001 | 6.1% | 48.4% | 89.0% | 1.0% |
| R3774_D0HMLACXX_GGCTAC_L006_R1_001 | 8.2% | 48.6% | 89.0% | 1.2% |
| R3791_C0JV6ACXX_GATCAG_L005_R1_001 | 7.9% | 47.6% | 81.1% | 0.6% |
| R3901_C3V3YACXX_CGCTCATT_L001_R1_001 | 0.9% | 47.6% | 93.3% | 1.8% |
| R3906_C0GWRACXX_ACTTGA_L001_R1_001 | 5.0% | 46.8% | 82.7% | 0.5% |
| R3921_C3V3YACXX_TTAGGC_L008_R1_001 | 17.4% | 47.4% | 94.9% | 1.2% |
| R3929_C101EACXX_CCGTCC_L005_R1_001 | 0.7% | 46.8% | 92.9% | 0.6% |
| R3932_D0HMLACXX_GCCAAT_L008_R1_001 | 14.7% | 46.6% | 83.4% | 1.0% |
| R3935_D2A01ACXX_TCCGGAGA_L005_R1_001 | 1.3% | 46.5% | 93.9% | 0.7% |
| R3942_D29FJACXX_TCCGGAGA_L005_R1_001 | 2.7% | 46.0% | 94.5% | 1.7% |
| R3944_D0HMLACXX_CAGATC_L008_R1_001 | 10.2% | 48.8% | 83.1% | 1.0% |
| R3969_C0JV6ACXX_CTTGTA_L005_R1_001 | 2.6% | 48.1% | 83.0% | 0.6% |
| R3974_C0GWRACXX_TGACCA_L001_R1_001 | 4.5% | 46.8% | 82.0% | 0.7% |
| R3977_C0VJYACXX_GGCTAC_L006_R1_001 | 5.0% | 46.1% | 79.5% | 1.5% |
| R3978_C0GWRACXX_CGATGT_L001_R1_001 | 2.8% | 47.0% | 83.8% | 0.5% |
| R3983_C0GWRACXX_ACAGTG_L001_R1_001 | 7.0% | 46.8% | 82.1% | 0.6% |
| R3985_C00L0ACXX_ATCACG_L007_R1_001 | 0.9% | 48.9% | 84.6% | 0.9% |
| R3991_C00L0ACXX_CGATGT_L007_R1_001 | 0.7% | 51.1% | 85.5% | 0.8% |
| R3996_C00L0ACXX_TGACCA_L007_R1_001 | 0.8% | 49.7% | 85.4% | 0.8% |
| R4010_C283CACXX_CGGCTATG_L001_R1_001 | 2.1% | 46.1% | 92.4% | 1.2% |
| R4041_D11NEACXX_ATTCCT_L005_R1_001 | 0.8% | 47.9% | 86.8% | 0.7% |
| R4044_C00JVACXX_TTAGGC_L007_R1_001 | 6.5% | 49.0% | 88.9% | 1.1% |
| R4047_C00JVACXX_TGACCA_L007_R1_001 | 2.8% | 48.1% | 92.9% | 0.7% |
| R4048_C0UH3ACXX_CGCTCATT_L001_R1_001 | 0.9% | 48.4% | 96.7% | 1.0% |
| R4051_C00JVACXX_GCCAAT_L007_R1_001 | 4.5% | 46.6% | 92.1% | 0.7% |
| R4070_C00JVACXX_ACTTGA_L008_R1_001 | 3.7% | 48.5% | 92.3% | 0.6% |
| R4075_C0JV6ACXX_GCCAAT_L006_R1_001 | 1.6% | 48.7% | 80.6% | 0.5% |
| R4105_C283CACXX_TCCGCGAA_L001_R1_001 | 2.5% | 46.6% | 92.2% | 1.4% |
| R4108_C0GWRACXX_ACAGTG_L003_R1_001 | 3.0% | 48.4% | 79.0% | 1.9% |
| R4111_D2A01ACXX_GAATTCGT_L005_R1_001 | 1.8% | 46.6% | 94.2% | 0.8% |
| R4112_C0GWRACXX_GCCAAT_L003_R1_001 | 1.4% | 48.4% | 78.8% | 1.6% |
| R4166_C0GWRACXX_GATCAG_L003_R1_001 | 4.1% | 51.9% | 76.8% | 1.8% |
| R4168_C0JYLACXX_CGATGT_L003_R1_001 | 5.6% | 48.9% | 88.1% | 0.9% |
| R4175_D1AAPACXX_GATCAG_L001_R1_001 | 0.7% | 47.7% | 86.7% | 0.8% |
| R4179_C28MYACXX_GAATTCGT_L001_R1_001 | 1.2% | 47.6% | 94.2% | 1.4% |
| R4184_C0JV6ACXX_CAGATC_L007_R1_001 | 1.6% | 48.6% | 78.7% | 0.6% |
| R4203_D1AAPACXX_GTCCGC_L005_R1_001 | 0.6% | 47.9% | 89.2% | 0.8% |
| R4215_C0GWRACXX_TAGCTT_L003_R1_001 | 4.0% | 51.3% | 77.6% | 1.8% |
| R4225_D1AAPACXX_ATTCCT_L005_R1_001 | 0.9% | 46.6% | 88.7% | 0.9% |
| R4226_C0JKHACXX_CTTGTA_L008_R1_001 | 3.6% | 51.1% | 78.0% | 3.1% |
| R4227_D1AACACXX_ATCACG_L001_R1_001 | 1.3% | 48.1% | 94.3% | 0.8% |
| R4235_C0UH3ACXX_CGCTCATT_L005_R1_001 | 1.1% | 47.4% | 96.4% | 0.8% |
| R4242_C0JV6ACXX_GATCAG_L007_R1_001 | 6.2% | 47.0% | 78.0% | 0.7% |
| R4271_D0AUAACXX_ATCACG_L003_R1_001 | 3.5% | 49.8% | 83.9% | 2.4% |
| R4279_C00JVACXX_ACTTGA_L006_R1_001 | 4.6% | 48.6% | 91.8% | 0.6% |
| R4289_C00JVACXX_CTTGTA_L008_R1_001 | 3.7% | 49.4% | 92.5% | 0.6% |
| R4292_D19K4ACXX_CTGAAGCT_L001_R1_001 | 5.5% | 46.6% | 94.9% | 1.4% |
| R4303_D19K4ACXX_TCCGCGAA_L001_R1_001 | 2.4% | 48.2% | 95.5% | 1.1% |
| R4324_C00JVACXX_GATCAG_L006_R1_001 | 3.4% | 47.6% | 90.6% | 0.6% |
| R4326_C1MBUACXX_CCGTCC_L008_R1_001 | 0.9% | 47.6% | 96.3% | 0.7% |
| R4334_C0GWRACXX_GCCAAT_L004_R1_001 | 3.1% | 47.6% | 75.4% | 2.0% |
| R4339_C0GWRACXX_ACTTGA_L004_R1_001 | 5.6% | 51.3% | 73.7% | 2.7% |
| R4347_D0AUAACXX_GGCTAC_L007_R1_001 | 9.5% | 52.9% | 81.3% | 2.4% |
| R4348_C0JV6ACXX_GGCTAC_L008_R1_001 | 3.2% | 46.6% | 75.8% | 0.5% |
| R4353_C0CEWACXX_TAGCTT_L002_R1_001 | 5.5% | 51.8% | 79.0% | 2.4% |
| R4354_C0UH3ACXX_AGCGATAG_L001_R1_001 | 1.8% | 47.7% | 96.6% | 1.2% |
| R4356_D19K4ACXX_CTGAAGCT_L003_R1_001 | 2.3% | 48.0% | 95.0% | 1.1% |
| R4357_C0VJYACXX_CGATGT_L007_R1_001 | 0.8% | 47.8% | 79.3% | 2.0% |
| R4362_C0VJYACXX_TTAGGC_L008_R1_001 | 1.9% | 47.1% | 79.5% | 3.0% |
| R4363_C28MPACXX_TCTCGCGC_L003_R1_001 | 2.1% | 46.9% | 90.6% | 1.2% |
| R4370_C0CEWACXX_CAGATC_L002_R1_001 | 12.0% | 51.6% | 74.6% | 3.8% |
| R4386_C00JVACXX_CGATGT_L005_R1_001 | 3.1% | 49.0% | 91.9% | 0.6% |
| R4397_C0JV6ACXX_CGATGT_L008_R1_001 | 3.0% | 47.5% | 75.3% | 0.6% |
| R4413_C00JVACXX_ACAGTG_L005_R1_001 | 4.4% | 48.2% | 89.2% | 0.8% |
| R4420_C28MYACXX_CGCTCATT_L001_R1_001 | 0.8% | 47.4% | 95.4% | 0.8% |
| R4421_C0CEWACXX_GCCAAT_L004_R1_001 | 4.9% | 48.9% | 75.5% | 2.4% |
| R4424_C1MBUACXX_ATGTCA_L003_R1_001 | 0.7% | 47.5% | 86.6% | 0.5% |
| R4426_C0CEWACXX_ACTTGA_L004_R1_001 | 11.0% | 51.2% | 72.3% | 2.6% |
| R5592_C3VHJACXX_ACAGTG_L006_R1_001 | 1.8% | 48.3% | 95.3% | 0.4% |
| R5593_C3VHJACXX_GCCAAT_L006_R1_001 | 4.6% | 48.1% | 95.8% | 0.3% |
| R5596_D0AUAACXX_ATCACG_L008_R1_001 | 6.1% | 49.1% | 79.3% | 2.0% |
| R5597_C282LACXX_ATTACTCG_L001_R1_001 | 1.1% | 47.9% | 90.3% | 1.6% |
| R5600_C282LACXX_TCCGGAGA_L001_R1_001 | 2.7% | 47.3% | 90.6% | 1.4% |
| R5601_C3VHJACXX_TAGCTT_L006_R1_001 | 2.5% | 47.8% | 95.8% | 0.3% |
| R5602_C28MYACXX_CGCTCATT_L005_R1_001 | 2.0% | 46.8% | 95.5% | 0.8% |
| R5615_D0AUAACXX_TTAGGC_L008_R1_001 | 9.7% | 48.7% | 79.0% | 1.6% |
| R5622_C282LACXX_CTGAAGCT_L001_R1_001 | 2.1% | 47.3% | 90.8% | 1.4% |
| R5623_C282LACXX_TAATGCGC_L001_R1_001 | 0.8% | 47.4% | 90.6% | 1.6% |
| R5624_D0AUAACXX_TGACCA_L008_R1_001 | 8.2% | 49.1% | 77.2% | 2.0% |
| R5625_D0ATGACXX_ACAGTG_L001_R1_001 | 10.3% | 49.1% | 78.8% | 2.1% |
| R5627_C0VJYACXX_ACTTGA_L008_R1_001 | 2.8% | 51.8% | 77.6% | 2.8% |
| R5629_C0VJYACXX_TAGCTT_L006_R1_001 | 5.1% | 51.8% | 73.3% | 3.2% |
| R5740_D0J0GACXX_CGATGT_L002_R1_001 | 4.0% | 49.5% | 88.0% | 3.6% |
| R5741_C0VJYACXX_TTAGGC_L006_R1_001 | 9.5% | 46.3% | 74.0% | 2.7% |
| R5746_D0ATGACXX_GCCAAT_L003_R1_001 | 3.2% | 48.0% | 82.3% | 2.7% |
| R5748_D0ATGACXX_CAGATC_L003_R1_001 | 6.0% | 52.8% | 80.2% | 2.8% |
| R5861_C0JKHACXX_GCCAAT_L001_R1_001 | 4.0% | 48.1% | 86.2% | 0.7% |
| R5863_C28MYACXX_CTGAAGCT_L001_R1_001 | 0.8% | 47.2% | 95.3% | 0.8% |
| R5868_C28MMACXX_GAATTCGT_L005_R1_001 | 1.7% | 47.4% | 93.7% | 1.9% |
| R5885_C0CEWACXX_TTAGGC_L003_R1_001 | 5.1% | 47.7% | 77.2% | 2.1% |
| R6533_C284PACXX_TCTCGCGC_L004_R1_001 | 3.1% | 46.8% | 94.8% | 2.1% |
| R6535_C284PACXX_TCCGGAGA_L005_R1_001 | 4.4% | 46.5% | 93.9% | 1.9% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Duplication Rates
Duplication rates of sampled reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Insert Sizes
Insert size estimation of sampled reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Sequence Quality
Average sequencing quality over each base of all reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
GC Content
Average GC content over each base of all reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
N content
Average N content over each base of all reads.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
