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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.9

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

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        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-06-04, 14:53 based on data in: /mnt/disks/sba1/pipeline_v4/LOGS/FASTP_LOG


        General Statistics

        Showing 168/168 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        R2809_D2A01ACXX_TAATGCGC_L005_R1_001
        1.4%
        46.8%
        93.8%
        0.8%
        R2826_C00JVACXX_TGACCA_L001_R1_001
        5.7%
        48.8%
        87.7%
        0.9%
        R2828_C0UH3ACXX_TAATGCGC_L005_R1_001
        2.8%
        47.7%
        96.4%
        0.9%
        R2834_C0CEWACXX_ATCACG_L005_R1_001
        3.5%
        50.2%
        75.6%
        3.0%
        R2836_C3V3YACXX_CGGCTATG_L001_R1_001
        0.6%
        47.9%
        93.3%
        0.9%
        R2839_C0UH3ACXX_ATTACTCG_L001_R1_001
        1.2%
        47.7%
        96.6%
        0.9%
        R2841_C0JV6ACXX_ATCACG_L001_R1_001
        1.9%
        48.0%
        78.9%
        0.8%
        R2845_C00JVACXX_GCCAAT_L002_R1_001
        6.7%
        48.9%
        89.0%
        1.2%
        R2855_D0ATGACXX_TAGCTT_L004_R1_001
        4.0%
        52.8%
        83.9%
        2.5%
        R2857_D0ATGACXX_GGCTAC_L004_R1_001
        7.2%
        51.8%
        82.2%
        3.0%
        R2866_C0CEWACXX_CGATGT_L005_R1_001
        5.2%
        48.9%
        75.4%
        2.8%
        R2869_C0CEWACXX_TTAGGC_L006_R1_001
        2.7%
        47.6%
        67.1%
        2.0%
        R2874_C0CEWACXX_TGACCA_L006_R1_001
        3.2%
        47.6%
        67.0%
        2.0%
        R2885_C00JVACXX_ACTTGA_L002_R1_001
        4.7%
        48.9%
        91.8%
        0.9%
        R2886_C28J4ACXX_GAGATTCC_L001_R1_001
        1.4%
        46.6%
        95.4%
        1.6%
        R2890_C00L0ACXX_TTAGGC_L002_R1_001
        1.2%
        48.6%
        87.5%
        1.0%
        R2893_C0JV6ACXX_TTAGGC_L001_R1_001
        2.3%
        47.3%
        79.3%
        0.7%
        R2894_C0JV6ACXX_ATCACG_L005_R1_001
        3.9%
        47.9%
        81.6%
        0.7%
        R2896_C28MYACXX_TAATGCGC_L001_R1_001
        1.0%
        47.5%
        94.0%
        0.8%
        R2897_C0CEWACXX_GCCAAT_L006_R1_001
        2.6%
        47.6%
        67.7%
        2.2%
        R2901_C0CEWACXX_ACTTGA_L007_R1_001
        7.1%
        51.8%
        75.4%
        2.7%
        R2945_C28MYACXX_CGGCTATG_L001_R1_001
        1.8%
        46.3%
        94.6%
        0.8%
        R2947_D193PACXX_TGACCA_L007_R1_001
        0.8%
        48.3%
        89.2%
        0.8%
        R2948_C00L0ACXX_ACTTGA_L003_R1_001
        2.0%
        47.3%
        85.2%
        0.8%
        R2954_C00JVACXX_TAGCTT_L002_R1_001
        4.5%
        47.3%
        90.7%
        0.8%
        R2958_C0CEWACXX_GATCAG_L007_R1_001
        7.2%
        51.9%
        72.7%
        2.9%
        R2962_C28MYACXX_CGGCTATG_L005_R1_001
        0.6%
        47.0%
        95.0%
        0.8%
        R2980_C0JV6ACXX_ACAGTG_L001_R1_001
        1.9%
        48.0%
        79.5%
        0.7%
        R2996_C0CEWACXX_TAGCTT_L008_R1_001
        7.2%
        50.9%
        69.1%
        2.2%
        R2999_C00JVACXX_CTTGTA_L003_R1_001
        5.4%
        48.4%
        90.3%
        0.7%
        R3005_C0JV6ACXX_GCCAAT_L002_R1_001
        2.6%
        47.0%
        81.6%
        0.6%
        R3016_D2A01ACXX_ATTACTCG_L001_R1_001
        1.4%
        46.8%
        93.3%
        0.6%
        R3017_C0JV6ACXX_CAGATC_L002_R1_001
        3.9%
        47.8%
        79.4%
        0.7%
        R3036_D193PACXX_TAGCTT_L007_R1_001
        1.1%
        47.0%
        91.3%
        0.6%
        R3071_C28MPACXX_CGGCTATG_L005_R1_001
        3.2%
        46.9%
        90.1%
        1.1%
        R3373_C0VJYACXX_CGATGT_L005_R1_001
        2.8%
        48.7%
        80.7%
        1.9%
        R3375_C0UH3ACXX_ATTCAGAA_L005_R1_001
        0.5%
        47.9%
        96.5%
        0.8%
        R3385_C00JVACXX_TGACCA_L003_R1_001
        4.3%
        48.6%
        89.7%
        0.8%
        R3393_C0JV6ACXX_ACTTGA_L002_R1_001
        2.1%
        47.5%
        80.5%
        0.8%
        R3395_C28MYACXX_TCCGGAGA_L001_R1_001
        0.9%
        47.5%
        95.3%
        0.8%
        R3399_C00JVACXX_CAGATC_L004_R1_001
        4.6%
        48.2%
        89.0%
        0.6%
        R3419_C0JV6ACXX_TAGCTT_L002_R1_001
        2.5%
        47.5%
        80.8%
        0.6%
        R3421_C00JVACXX_TAGCTT_L004_R1_001
        4.3%
        48.9%
        89.5%
        0.7%
        R3441_C00JVACXX_CTTGTA_L005_R1_001
        3.9%
        48.7%
        91.4%
        0.6%
        R3444_D0HMLACXX_ATCACG_L001_R1_001
        6.0%
        47.7%
        85.9%
        1.8%
        R3445_D0HMLACXX_CGATGT_L001_R1_001
        3.4%
        48.1%
        87.0%
        1.0%
        R3455_C0GWRACXX_GATCAG_L001_R1_001
        5.8%
        46.8%
        82.4%
        0.6%
        R3469_C0JV6ACXX_CGATGT_L003_R1_001
        1.3%
        48.3%
        75.8%
        0.6%
        R3478_C0JYLACXX_GGCTAC_L002_R1_001
        12.9%
        47.5%
        89.5%
        0.6%
        R3479_D0HMLACXX_GCCAAT_L002_R1_001
        8.3%
        47.9%
        86.6%
        2.0%
        R3489_D19K4ACXX_TCTCGCGC_L003_R1_001
        2.9%
        47.6%
        95.4%
        1.0%
        R3491_D0HMLACXX_CAGATC_L002_R1_001
        4.7%
        47.6%
        88.8%
        1.7%
        R3496_C0VJYACXX_ACTTGA_L006_R1_001
        35.8%
        46.9%
        75.7%
        1.5%
        R3506_C2K2WACXX_ATTCAGAA_L005_R1_001
        1.5%
        47.4%
        42.7%
        1.7%
        R3518_C0GWRACXX_TTAGGC_L001_R1_001
        10.0%
        47.1%
        82.9%
        0.6%
        R3540_D0HMLACXX_CGATGT_L003_R1_001
        8.6%
        47.6%
        87.4%
        2.0%
        R3541_C0GWRACXX_ATCACG_L001_R1_001
        2.9%
        47.8%
        82.2%
        0.6%
        R3543_C0JV6ACXX_TTAGGC_L003_R1_001
        1.9%
        47.8%
        75.5%
        0.6%
        R3554_C0JV6ACXX_TGACCA_L004_R1_001
        2.1%
        48.3%
        79.4%
        0.7%
        R3555_C0VJYACXX_TGACCA_L006_R1_001
        2.8%
        46.9%
        77.3%
        1.5%
        R3568_D0HMLACXX_GCCAAT_L004_R1_001
        5.9%
        47.8%
        87.3%
        1.0%
        R3575_C0JV6ACXX_GCCAAT_L004_R1_001
        1.8%
        48.2%
        79.6%
        0.5%
        R3598_C0JYLACXX_ATCACG_L003_R1_001
        8.2%
        47.3%
        88.4%
        0.7%
        R3602_C0VJYACXX_GATCAG_L001_R1_001
        4.8%
        46.8%
        79.3%
        2.8%
        R3607_D19K4ACXX_CGGCTATG_L007_R1_001
        4.3%
        48.4%
        89.7%
        1.2%
        R3611_C0VJYACXX_GGCTAC_L002_R1_001
        2.0%
        47.6%
        87.5%
        1.0%
        R3639_C2K2WACXX_GAATTCGT_L001_R1_001
        2.8%
        47.1%
        89.3%
        2.1%
        R3646_C28MYACXX_GAGATTCC_L001_R1_001
        2.0%
        46.0%
        94.7%
        0.8%
        R3656_D29FJACXX_TCCGGAGA_L001_R1_001
        2.6%
        46.5%
        94.9%
        1.8%
        R3666_C0JM8ACXX_TGACCA_L006_R1_001
        10.9%
        47.0%
        74.4%
        1.0%
        R3673_D29FJACXX_CGCTCATT_L001_R1_001
        2.3%
        45.9%
        94.9%
        1.9%
        R3674_C00JVACXX_ATCACG_L005_R1_001
        2.3%
        48.9%
        91.9%
        0.6%
        R3676_D29FJACXX_GAGATTCC_L001_R1_001
        1.8%
        46.5%
        95.2%
        1.6%
        R3678_D29FJACXX_GAATTCGT_L001_R1_001
        2.1%
        46.6%
        95.1%
        2.2%
        R3705_C0JYLACXX_TTAGGC_L003_R1_001
        12.3%
        47.6%
        88.5%
        0.6%
        R3765_D29GFACXX_ATTCAGAA_L001_R1_001
        2.2%
        46.8%
        88.1%
        1.4%
        R3771_D0HMLACXX_TAGCTT_L006_R1_001
        6.1%
        48.4%
        89.0%
        1.0%
        R3774_D0HMLACXX_GGCTAC_L006_R1_001
        8.2%
        48.6%
        89.0%
        1.2%
        R3791_C0JV6ACXX_GATCAG_L005_R1_001
        7.9%
        47.6%
        81.1%
        0.6%
        R3901_C3V3YACXX_CGCTCATT_L001_R1_001
        0.9%
        47.6%
        93.3%
        1.8%
        R3906_C0GWRACXX_ACTTGA_L001_R1_001
        5.0%
        46.8%
        82.7%
        0.5%
        R3921_C3V3YACXX_TTAGGC_L008_R1_001
        17.4%
        47.4%
        94.9%
        1.2%
        R3929_C101EACXX_CCGTCC_L005_R1_001
        0.7%
        46.8%
        92.9%
        0.6%
        R3932_D0HMLACXX_GCCAAT_L008_R1_001
        14.7%
        46.6%
        83.4%
        1.0%
        R3935_D2A01ACXX_TCCGGAGA_L005_R1_001
        1.3%
        46.5%
        93.9%
        0.7%
        R3942_D29FJACXX_TCCGGAGA_L005_R1_001
        2.7%
        46.0%
        94.5%
        1.7%
        R3944_D0HMLACXX_CAGATC_L008_R1_001
        10.2%
        48.8%
        83.1%
        1.0%
        R3969_C0JV6ACXX_CTTGTA_L005_R1_001
        2.6%
        48.1%
        83.0%
        0.6%
        R3974_C0GWRACXX_TGACCA_L001_R1_001
        4.5%
        46.8%
        82.0%
        0.7%
        R3977_C0VJYACXX_GGCTAC_L006_R1_001
        5.0%
        46.1%
        79.5%
        1.5%
        R3978_C0GWRACXX_CGATGT_L001_R1_001
        2.8%
        47.0%
        83.8%
        0.5%
        R3983_C0GWRACXX_ACAGTG_L001_R1_001
        7.0%
        46.8%
        82.1%
        0.6%
        R3985_C00L0ACXX_ATCACG_L007_R1_001
        0.9%
        48.9%
        84.6%
        0.9%
        R3991_C00L0ACXX_CGATGT_L007_R1_001
        0.7%
        51.1%
        85.5%
        0.8%
        R3996_C00L0ACXX_TGACCA_L007_R1_001
        0.8%
        49.7%
        85.4%
        0.8%
        R4010_C283CACXX_CGGCTATG_L001_R1_001
        2.1%
        46.1%
        92.4%
        1.2%
        R4041_D11NEACXX_ATTCCT_L005_R1_001
        0.8%
        47.9%
        86.8%
        0.7%
        R4044_C00JVACXX_TTAGGC_L007_R1_001
        6.5%
        49.0%
        88.9%
        1.1%
        R4047_C00JVACXX_TGACCA_L007_R1_001
        2.8%
        48.1%
        92.9%
        0.7%
        R4048_C0UH3ACXX_CGCTCATT_L001_R1_001
        0.9%
        48.4%
        96.7%
        1.0%
        R4051_C00JVACXX_GCCAAT_L007_R1_001
        4.5%
        46.6%
        92.1%
        0.7%
        R4070_C00JVACXX_ACTTGA_L008_R1_001
        3.7%
        48.5%
        92.3%
        0.6%
        R4075_C0JV6ACXX_GCCAAT_L006_R1_001
        1.6%
        48.7%
        80.6%
        0.5%
        R4105_C283CACXX_TCCGCGAA_L001_R1_001
        2.5%
        46.6%
        92.2%
        1.4%
        R4108_C0GWRACXX_ACAGTG_L003_R1_001
        3.0%
        48.4%
        79.0%
        1.9%
        R4111_D2A01ACXX_GAATTCGT_L005_R1_001
        1.8%
        46.6%
        94.2%
        0.8%
        R4112_C0GWRACXX_GCCAAT_L003_R1_001
        1.4%
        48.4%
        78.8%
        1.6%
        R4166_C0GWRACXX_GATCAG_L003_R1_001
        4.1%
        51.9%
        76.8%
        1.8%
        R4168_C0JYLACXX_CGATGT_L003_R1_001
        5.6%
        48.9%
        88.1%
        0.9%
        R4175_D1AAPACXX_GATCAG_L001_R1_001
        0.7%
        47.7%
        86.7%
        0.8%
        R4179_C28MYACXX_GAATTCGT_L001_R1_001
        1.2%
        47.6%
        94.2%
        1.4%
        R4184_C0JV6ACXX_CAGATC_L007_R1_001
        1.6%
        48.6%
        78.7%
        0.6%
        R4203_D1AAPACXX_GTCCGC_L005_R1_001
        0.6%
        47.9%
        89.2%
        0.8%
        R4215_C0GWRACXX_TAGCTT_L003_R1_001
        4.0%
        51.3%
        77.6%
        1.8%
        R4225_D1AAPACXX_ATTCCT_L005_R1_001
        0.9%
        46.6%
        88.7%
        0.9%
        R4226_C0JKHACXX_CTTGTA_L008_R1_001
        3.6%
        51.1%
        78.0%
        3.1%
        R4227_D1AACACXX_ATCACG_L001_R1_001
        1.3%
        48.1%
        94.3%
        0.8%
        R4235_C0UH3ACXX_CGCTCATT_L005_R1_001
        1.1%
        47.4%
        96.4%
        0.8%
        R4242_C0JV6ACXX_GATCAG_L007_R1_001
        6.2%
        47.0%
        78.0%
        0.7%
        R4271_D0AUAACXX_ATCACG_L003_R1_001
        3.5%
        49.8%
        83.9%
        2.4%
        R4279_C00JVACXX_ACTTGA_L006_R1_001
        4.6%
        48.6%
        91.8%
        0.6%
        R4289_C00JVACXX_CTTGTA_L008_R1_001
        3.7%
        49.4%
        92.5%
        0.6%
        R4292_D19K4ACXX_CTGAAGCT_L001_R1_001
        5.5%
        46.6%
        94.9%
        1.4%
        R4303_D19K4ACXX_TCCGCGAA_L001_R1_001
        2.4%
        48.2%
        95.5%
        1.1%
        R4324_C00JVACXX_GATCAG_L006_R1_001
        3.4%
        47.6%
        90.6%
        0.6%
        R4326_C1MBUACXX_CCGTCC_L008_R1_001
        0.9%
        47.6%
        96.3%
        0.7%
        R4334_C0GWRACXX_GCCAAT_L004_R1_001
        3.1%
        47.6%
        75.4%
        2.0%
        R4339_C0GWRACXX_ACTTGA_L004_R1_001
        5.6%
        51.3%
        73.7%
        2.7%
        R4347_D0AUAACXX_GGCTAC_L007_R1_001
        9.5%
        52.9%
        81.3%
        2.4%
        R4348_C0JV6ACXX_GGCTAC_L008_R1_001
        3.2%
        46.6%
        75.8%
        0.5%
        R4353_C0CEWACXX_TAGCTT_L002_R1_001
        5.5%
        51.8%
        79.0%
        2.4%
        R4354_C0UH3ACXX_AGCGATAG_L001_R1_001
        1.8%
        47.7%
        96.6%
        1.2%
        R4356_D19K4ACXX_CTGAAGCT_L003_R1_001
        2.3%
        48.0%
        95.0%
        1.1%
        R4357_C0VJYACXX_CGATGT_L007_R1_001
        0.8%
        47.8%
        79.3%
        2.0%
        R4362_C0VJYACXX_TTAGGC_L008_R1_001
        1.9%
        47.1%
        79.5%
        3.0%
        R4363_C28MPACXX_TCTCGCGC_L003_R1_001
        2.1%
        46.9%
        90.6%
        1.2%
        R4370_C0CEWACXX_CAGATC_L002_R1_001
        12.0%
        51.6%
        74.6%
        3.8%
        R4386_C00JVACXX_CGATGT_L005_R1_001
        3.1%
        49.0%
        91.9%
        0.6%
        R4397_C0JV6ACXX_CGATGT_L008_R1_001
        3.0%
        47.5%
        75.3%
        0.6%
        R4413_C00JVACXX_ACAGTG_L005_R1_001
        4.4%
        48.2%
        89.2%
        0.8%
        R4420_C28MYACXX_CGCTCATT_L001_R1_001
        0.8%
        47.4%
        95.4%
        0.8%
        R4421_C0CEWACXX_GCCAAT_L004_R1_001
        4.9%
        48.9%
        75.5%
        2.4%
        R4424_C1MBUACXX_ATGTCA_L003_R1_001
        0.7%
        47.5%
        86.6%
        0.5%
        R4426_C0CEWACXX_ACTTGA_L004_R1_001
        11.0%
        51.2%
        72.3%
        2.6%
        R5592_C3VHJACXX_ACAGTG_L006_R1_001
        1.8%
        48.3%
        95.3%
        0.4%
        R5593_C3VHJACXX_GCCAAT_L006_R1_001
        4.6%
        48.1%
        95.8%
        0.3%
        R5596_D0AUAACXX_ATCACG_L008_R1_001
        6.1%
        49.1%
        79.3%
        2.0%
        R5597_C282LACXX_ATTACTCG_L001_R1_001
        1.1%
        47.9%
        90.3%
        1.6%
        R5600_C282LACXX_TCCGGAGA_L001_R1_001
        2.7%
        47.3%
        90.6%
        1.4%
        R5601_C3VHJACXX_TAGCTT_L006_R1_001
        2.5%
        47.8%
        95.8%
        0.3%
        R5602_C28MYACXX_CGCTCATT_L005_R1_001
        2.0%
        46.8%
        95.5%
        0.8%
        R5615_D0AUAACXX_TTAGGC_L008_R1_001
        9.7%
        48.7%
        79.0%
        1.6%
        R5622_C282LACXX_CTGAAGCT_L001_R1_001
        2.1%
        47.3%
        90.8%
        1.4%
        R5623_C282LACXX_TAATGCGC_L001_R1_001
        0.8%
        47.4%
        90.6%
        1.6%
        R5624_D0AUAACXX_TGACCA_L008_R1_001
        8.2%
        49.1%
        77.2%
        2.0%
        R5625_D0ATGACXX_ACAGTG_L001_R1_001
        10.3%
        49.1%
        78.8%
        2.1%
        R5627_C0VJYACXX_ACTTGA_L008_R1_001
        2.8%
        51.8%
        77.6%
        2.8%
        R5629_C0VJYACXX_TAGCTT_L006_R1_001
        5.1%
        51.8%
        73.3%
        3.2%
        R5740_D0J0GACXX_CGATGT_L002_R1_001
        4.0%
        49.5%
        88.0%
        3.6%
        R5741_C0VJYACXX_TTAGGC_L006_R1_001
        9.5%
        46.3%
        74.0%
        2.7%
        R5746_D0ATGACXX_GCCAAT_L003_R1_001
        3.2%
        48.0%
        82.3%
        2.7%
        R5748_D0ATGACXX_CAGATC_L003_R1_001
        6.0%
        52.8%
        80.2%
        2.8%
        R5861_C0JKHACXX_GCCAAT_L001_R1_001
        4.0%
        48.1%
        86.2%
        0.7%
        R5863_C28MYACXX_CTGAAGCT_L001_R1_001
        0.8%
        47.2%
        95.3%
        0.8%
        R5868_C28MMACXX_GAATTCGT_L005_R1_001
        1.7%
        47.4%
        93.7%
        1.9%
        R5885_C0CEWACXX_TTAGGC_L003_R1_001
        5.1%
        47.7%
        77.2%
        2.1%
        R6533_C284PACXX_TCTCGCGC_L004_R1_001
        3.1%
        46.8%
        94.8%
        2.1%
        R6535_C284PACXX_TCCGGAGA_L005_R1_001
        4.4%
        46.5%
        93.9%
        1.9%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Duplication Rates

        Duplication rates of sampled reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Insert Sizes

        Insert size estimation of sampled reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Quality

        Average sequencing quality over each base of all reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        GC Content

        Average GC content over each base of all reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        N content

        Average N content over each base of all reads.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).